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fix: use AbsolutePathBuf for permission profile file roots (#12970)
## Why `PermissionProfile` should describe filesystem roots as absolute paths at the type level. Using `PathBuf` in `FileSystemPermissions` made the shared type too permissive and blurred together three different deserialization cases: - skill metadata in `agents/openai.yaml`, where relative paths should resolve against the skill directory - app-server API payloads, where callers should have to send absolute paths - local tool-call payloads for commands like `shell_command` and `exec_command`, where `additional_permissions.file_system` may legitimately be relative to the command `workdir` This change tightens the shared model without regressing the existing local command flow. ## What Changed - changed `protocol::models::FileSystemPermissions` and the app-server `AdditionalFileSystemPermissions` mirror to use `AbsolutePathBuf` - wrapped skill metadata deserialization in `AbsolutePathBufGuard`, so relative permission roots in `agents/openai.yaml` resolve against the containing skill directory - kept app-server/API deserialization strict, so relative `additionalPermissions.fileSystem.*` paths are rejected at the boundary - restored cwd/workdir-relative deserialization for local tool-call payloads by parsing `shell`, `shell_command`, and `exec_command` arguments under an `AbsolutePathBufGuard` rooted at the resolved command working directory - simplified runtime additional-permission normalization so it only canonicalizes and deduplicates absolute roots instead of trying to recover relative ones later - updated the app-server schema fixtures, `app-server/README.md`, and the affected transport/TUI tests to match the final behavior
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@@ -710,7 +710,7 @@ Certain actions (shell commands or modifying files) may require explicit user ap
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Order of messages:
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1. `item/started` — shows the pending `commandExecution` item with `command`, `cwd`, and other fields so you can render the proposed action.
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2. `item/commandExecution/requestApproval` (request) — carries the same `itemId`, `threadId`, `turnId`, optionally `approvalId` (for subcommand callbacks), and `reason`. For normal command approvals, it also includes `command`, `cwd`, and `commandActions` for friendly display. When `initialize.params.capabilities.experimentalApi = true`, it may also include experimental `additionalPermissions` describing requested per-command sandbox access. For network-only approvals, those command fields may be omitted and `networkApprovalContext` is provided instead. Optional persistence hints may also be included via `proposedExecpolicyAmendment` and `proposedNetworkPolicyAmendments`. Clients can prefer `availableDecisions` when present to render the exact set of choices the server wants to expose, while still falling back to the older heuristics if it is omitted.
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2. `item/commandExecution/requestApproval` (request) — carries the same `itemId`, `threadId`, `turnId`, optionally `approvalId` (for subcommand callbacks), and `reason`. For normal command approvals, it also includes `command`, `cwd`, and `commandActions` for friendly display. When `initialize.params.capabilities.experimentalApi = true`, it may also include experimental `additionalPermissions` describing requested per-command sandbox access; any filesystem paths in that payload are absolute on the wire. For network-only approvals, those command fields may be omitted and `networkApprovalContext` is provided instead. Optional persistence hints may also be included via `proposedExecpolicyAmendment` and `proposedNetworkPolicyAmendments`. Clients can prefer `availableDecisions` when present to render the exact set of choices the server wants to expose, while still falling back to the older heuristics if it is omitted.
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3. Client response — for example `{ "decision": "accept" }`, `{ "decision": "acceptForSession" }`, `{ "decision": { "acceptWithExecpolicyAmendment": { "execpolicy_amendment": [...] } } }`, `{ "decision": { "applyNetworkPolicyAmendment": { "network_policy_amendment": { "host": "example.com", "action": "allow" } } } }`, `{ "decision": "decline" }`, or `{ "decision": "cancel" }`.
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4. `item/completed` — final `commandExecution` item with `status: "completed" | "failed" | "declined"` and execution output. Render this as the authoritative result.
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