**Stack position:** [1 of 7]
## Summary
The first three PRs in this stack are a cleanup pass before the actual
thread settings API work.
Today, core has several overlapping "user input" ops: `UserInput`,
`UserInputWithTurnContext`, and `UserTurn`. They differ mostly in how
much next-turn state they carry, which makes the later queued thread
settings update harder to reason about and review.
This PR starts that cleanup by adding the shared
`ThreadSettingsOverrides` payload and allowing `Op::UserInput` to carry
it. Existing variants remain in place here, so this layer is mostly a
behavior-preserving API shape change plus mechanical constructor
updates.
## End State After PR3
By the end of PR3, `Op::UserInput` is the only "user input" core op. It
can carry optional thread settings overrides for callers that need to
update stored defaults with a turn, while callers without updates use
empty settings. `Op::UserInputWithTurnContext` and `Op::UserTurn` are
deleted.
## End State After PR5
By the end of PR5, core will have only two ops for this area:
- `Op::UserInput` for user-input-bearing submissions.
- `Op::ThreadSettings` for settings-only updates.
## Stack
1. [1 of 7] [Add thread settings to
UserInput](https://github.com/openai/codex/pull/23080) (this PR)
2. [2 of 7] [Remove
UserInputWithTurnContext](https://github.com/openai/codex/pull/23081)
3. [3 of 7] [Remove
UserTurn](https://github.com/openai/codex/pull/23075)
4. [4 of 7] [Placeholder for OverrideTurnContext
cleanup](https://github.com/openai/codex/pull/23087)
5. [5 of 7] [Replace OverrideTurnContext with
ThreadSettings](https://github.com/openai/codex/pull/22508)
6. [6 of 7] [Add app-server thread settings
API](https://github.com/openai/codex/pull/22509)
7. [7 of 7] [Sync TUI thread
settings](https://github.com/openai/codex/pull/22510)
## Summary
- mark `ToolSearch` as removed and ignore stale config writes for its
legacy key
- make search tool exposure depend only on model capability, not a
feature toggle
- remove app-server enablement support and prune now-obsolete test
coverage/setup
## Verification
- `cargo test -p codex-features`
- `cargo test -p codex-tools`
- `cargo test -p codex-core search_tool_requires_model_capability`
- `cargo test -p codex-app-server experimental_feature_enablement_set_`
## Notes
- This keeps the legacy config key as a no-op for compatibility while
removing the ability to toggle the behavior off cleanly.
- No developer-facing docs update outside the touched app-server README
was needed.
Deletes the skill env var dependency prompt feature and its runtime
path. env_var entries in skill dependency metadata are now silently
ignored during skill loading.
## Why
Compaction now installs replacement history inside the session, but the
turn and compaction callers were still reaching into
`ModelClientSession` to reset websocket transport state after that
install. That made a transport-level reset part of the compaction API
even though websocket incremental request selection already checks
whether the next request is a strict extension of the previous one and
falls back to a full `response.create` when it is not.
## What changed
- Removed the compaction-side calls to `reset_websocket_session` from
`compact.rs` and `session/turn.rs`.
- Simplified pre-sampling and mid-turn compaction helpers so they return
`CodexResult<()>` instead of carrying a reset flag.
- Made `ModelClientSession::reset_websocket_session` private to
`client.rs`, leaving only the websocket timeout recovery path inside the
client as a caller.
## Validation
- `cargo test -p codex-core --test all
responses_websocket_creates_on_non_prefix`
- `cargo test -p codex-core --test all
steered_user_input_waits_for_model_continuation_after_mid_turn_compact`
- `cargo test -p codex-core --test all
pre_sampling_compact_runs_on_switch_to_smaller_context_model`
## Why
Pending model input was split across `Session`, `TurnState`, and the
agent mailbox. That made it easy for new paths to manage queued user
input or mailbox delivery outside the intended ownership boundary.
This PR consolidates the model-facing input lifecycle behind the session
input queue so turn-local pending input, next-turn queued items, and
mailbox delivery coordination are owned in one place.
## What Changed
- Added `session/input_queue.rs` to own pending input queues and mailbox
delivery coordination.
- Removed the standalone `agent/mailbox.rs` channel wrapper and store
mailbox items directly in the input queue.
- Moved pending-input mutations off `TurnState`; `TurnState` now exposes
the queue-owned storage directly for now.
- Routed abort cleanup, mailbox delivery phase changes, next-turn queued
items, and active-turn pending input through `InputQueue`.
- Boxed stack-heavy agent resume/fork startup futures that the refactor
pushed over the default test stack.
- Updated session, task, goal, stream-event, and multi-agent call sites
and tests to use the new queue ownership.
## Verification
- `cargo test -p codex-core --lib agent::control::tests`
- `cargo test -p codex-core --lib
agent::control::tests::resume_closed_child_reopens_open_descendants --
--exact`
- `cargo test -p codex-core --lib
agent::control::tests::spawn_agent_fork_last_n_turns_keeps_only_recent_turns
-- --exact`
- `cargo test -p codex-core --lib
agent::control::tests::resume_thread_subagent_restores_stored_nickname_and_role
-- --exact`
- `cargo test -p codex-core` was also run; it completed with 1814
passed, 4 ignored, and one timeout in
`agent::control::tests::resume_thread_subagent_restores_stored_nickname_and_role`,
which passed when rerun in isolation.
Adding the id of the plugin that contains the MCP (if any) so we can
apply filters at plugin level.
## Summary
- carry the plugin owner into MCP runtime provenance
- attach `plugin_id` to outbound plugin-backed MCP tool-call `_meta`
- avoid misattributing user-configured MCP servers that shadow plugin
server names
## Testing
- `just fmt`
- `just fix -p codex-mcp`
- `just fix -p codex-core`
- `cargo test -p codex-mcp`
- `cargo test -p codex-core
plugin_mcp_tool_call_request_meta_includes_plugin_id`
- `cargo test -p codex-core
to_mcp_config_omits_plugin_id_when_user_server_shadows_plugin_mcp`
- `cargo test -p codex-core
rebuild_preserving_session_layers_refreshes_plugin_derived_mcp_config`
- `git diff --check`
## Notes
- Attempted `cargo test -p codex-core`; it aborted in
`agent::control::tests::resume_agent_from_rollout_skips_descendants_when_parent_resume_fails`
with a stack overflow before the full suite completed.
## Why
`TurnContextItem` is the durable baseline used to reconstruct context
diffs across resume/fork. Most of the old persisted-only fields on it
are no longer read, so keeping them in rollout snapshots adds schema
surface and state that can drift without affecting reconstruction.
`summary` is the exception: older Codex versions require it to
deserialize `turn_context` records, so keep writing a default
compatibility value until that schema surface can be removed safely.
## What changed
- Removed the unused persisted fields from `TurnContextItem`: trace ids,
user/developer instructions, output schema, and truncation policy.
- Kept `summary` with a compatibility comment and made
`TurnContext::to_turn_context_item` write `ReasoningSummary::Auto`
instead of live turn state.
- Updated rollout/context reconstruction fixtures for the retained
summary field.
## Verification
- `cargo test -p codex-protocol --lib turn_context_item`
- `cargo test -p codex-rollout
resume_candidate_matches_cwd_reads_latest_turn_context`
- `cargo test -p codex-state turn_context`
- `cargo test -p codex-core --lib
new_default_turn_captures_current_span_trace_id`
- `cargo test -p codex-core --lib
record_initial_history_resumed_turn_context_after_compaction_reestablishes_reference_context_item`
- `cargo test -p codex-core --test all
emits_warning_when_resumed_model_differs`
- `git diff --check`
## Why
Extensions that need to track runtime progress currently have no typed
host signal for tool execution. The goal extension in particular needs
to observe tool attempts without inspecting tool payloads, owning tool
implementations, or staying coupled to core-only runtime plumbing.
This adds a narrow lifecycle contributor API for host-owned tool
execution: extensions can observe when an accepted tool call starts and
how it finishes, while policy hooks and tool handlers continue to own
payload rewriting, blocking, and execution.
Relevant code:
-
[`ToolLifecycleContributor`](3ad2850ffc/codex-rs/ext/extension-api/src/contributors.rs (L119))
defines the extension-facing observer contract.
-
[`tool_lifecycle.rs`](3ad2850ffc/codex-rs/ext/extension-api/src/contributors/tool_lifecycle.rs)
defines the typed start/finish inputs, source, and outcome enums.
- [`notify_tool_start` /
`notify_tool_finish`](3ad2850ffc/codex-rs/core/src/tools/lifecycle.rs)
bridges core tool dispatch into the extension registry.
## What Changed
- Added `ToolLifecycleContributor` to `codex-extension-api`, including:
- `ToolStartInput`
- `ToolFinishInput`
- `ToolCallSource`
- `ToolCallOutcome`
- Added registration and lookup support on `ExtensionRegistryBuilder` /
`ExtensionRegistry`.
- Wired core tool dispatch to notify lifecycle contributors for:
- accepted tool starts
- completed tool calls, including the tool output success marker
- pre-tool-use blocks
- failures before or after the handler runs
- cancellation/abort in the parallel tool path
- Registered the goal extension as a lifecycle contributor and added the
outcome filter it will use for goal progress accounting.
## Test Coverage
- Added `dispatch_notifies_tool_lifecycle_contributors` to cover
lifecycle notification ordering and outcomes for successful and
handler-failed tool calls.
## Why
Some tool providers, especially MCP servers and dynamic tool sources,
can supply schema nodes that omit `type` and have no recognized JSON
Schema shape hints. Previously, `sanitize_json_schema` filled those
unknown nodes in as `string`, which made the schema parseable but
invented a scalar constraint that the provider did not specify. For
description-only fields, that could incorrectly steer tool arguments
away from the provider's actual accepted shape.
The Responses API accepts permissive empty schemas such as `{}` at
nested property positions, so Codex should preserve that permissive
meaning instead of coercing unknown schema nodes into a misleading
scalar type.
## What Changed
- Changed the no-hints fallback in `codex-rs/tools/src/json_schema.rs`
to clear unrecognized object schema nodes to `{}`.
- Empty schemas now remain `{}` rather than becoming `type: "string"`.
- Description-only or otherwise metadata-only nested property schemas
now become `{}` while surrounding object/array/string/number inference
still applies when recognized hints are present.
- Updated `codex-tools` and `codex-core` tests to cover top-level empty
schemas, nested empty schemas, metadata-only malformed schemas, dynamic
tools, and MCP tool specs.
## Verification
- `cargo test -p codex-tools`
- `cargo test -p codex-core
test_mcp_tool_property_missing_type_defaults_to_empty_schema`
- Manually verified the real Responses API behavior for both
empty-schema positions:
- Top-level function `parameters: {}` is accepted and echoed back as
`{"type":"object","properties":{}}`; when forced to call the tool,
Responses emitted empty object arguments: `"arguments": "{}"`.
- Nested property schema `{}` is accepted and preserved as `{}`; when
forced to call a tool with `metadata.extra`, Responses emitted
`"arguments": "{\"metadata\":{\"extra\":\"codex schema sanitizer
behavior\"}}"`.
## Summary
- make `load_global_instructions` read through an `ExecutorFileSystem`
- call global AGENTS reads with explicit `LOCAL_FS` so they stay tied to
local codex-home state
## Validation
- `bazel test --bes_backend= --bes_results_url=
--test_filter=instruction_sources_include_global_before_agents_md_docs
//codex-rs/core:core-unit-tests` on `dev`
## Problem
This addresses several user-reported cases where active goals were
paused even though the user had not explicitly asked for that
transition:
- the guardian approval-review circuit breaker interrupted a turn and
implicitly paused the goal
- a shutdown in one app-server instance could pause a goal while a
second instance was still actively running the same thread
- steering-style interrupts could also pause the goal even though they
are meant to redirect work, not stop the goal lifecycle
The common problem was that core treated `TurnAbortReason::Interrupted`
as an implicit request to transition the persisted goal to `paused`.
That made unrelated interrupt paths mutate goal state as a side effect,
and in the multi-app-server case it allowed stale process teardown to
pause a live goal owned by another running client.
After this change, transitioning a goal to `paused` is always an
explicit action performed by a client or another intentional goal-state
mutation. It is never an implicit transition triggered by generic
interrupt handling.
Refs #22884.
## What changed
- Remove the goal runtime path that paused active goals after
interrupted task aborts.
- Drop the now-unused abort reason from `GoalRuntimeEvent::TaskAborted`.
- Update the focused regression coverage so an interrupted active goal
still accounts usage but remains `active`.
Addresses #22833, #22245, #23067
## Why
`/goal` can keep synthesizing turns even when the next turn cannot make
meaningful progress. Hard usage exhaustion can replay failing turns, and
repeated permission or external-resource blockers can keep burning
tokens while waiting for user or system intervention.
## What changed
- Add resumable `blocked` and `usageLimited` goal states. As with
`paused`, goal continuation stops with these states.
- Move to `usageLimited` after usage-limit failures.
- Allow the built-in `update_goal` tool to set `blocked` only under
explicit repeated-impasse guidance. Updated goal continuation prompt to
specify that agent should use `blocked` only when it has made at least
three attempts to get past an impasse.
Most of the files touched by this PR are because of the small app server
protocol update.
## Validation
I manually reproduced a number of situations where an agent can run into
a true impasse and verified that it properly enters `blocked` state. I
then resumed and verified that it once again entered `blocked` state
several turns later if the impasse still exists.
I also manually reproduced the usage-limit condition by creating a
simulated responses API endpoint that returns 429 errors with the
appropriate error message. Verified that the goal runtime properly moves
the goal into `usageLimited` state and TUI UI updates appropriately.
Verified that `/goal resume` resumes (and immediately goes back into
`ussageLImited` state if appropriate).
## Follow-up PRs
Small changes will be needed to the GUI clients to properly handle the
two new states.
## Why
`TurnDiffTracker` computes a display root so turn diffs can be rendered
repo-relative. For remote exec-server turns, the selected turn `cwd` may
exist only inside the selected environment, but `run_turn` was
discovering the git root through the local host filesystem. When that
lookup failed, nested remote-session diffs fell back to the nested `cwd`
and showed `/tmp/...`-prefixed paths instead of repo-relative paths.
## What changed
- Resolve the diff display root from the primary selected turn
environment when one exists, using that environment's filesystem and
`cwd`.
- Add `codex_git_utils::get_git_repo_root_with_fs(...)` so git-root
discovery can run against an `ExecutorFileSystem`, including remote
environments.
- Reuse that helper from `resolve_root_git_project_for_trust(...)` and
add coverage for `.git` gitdir-pointer detection.
## Validation
- Devbox Bazel: `//codex-rs/core:core-unit-tests
--test_filter=get_git_repo_root_with_fs_detects_gitdir_pointer`
- Devbox Docker-backed remote-env repro: `//codex-rs/core:core-all-test
--test_filter=apply_patch_turn_diff_paths_stay_repo_relative_when_session_cwd_is_nested`
## Why
The client and tool pipeline still carried compatibility code for legacy
structured shell output. Current shell and apply_patch responses are
already plain text for model consumption, so keeping a
JSON-serialization path plus shell-item rewrite logic makes the request
formatter and tests preserve a format we do not need anymore.
## What Changed
- Removed the client-side shell output rewrite from
`core/src/client_common.rs`.
- Removed the structured exec-output formatter and the shell `freeform`
switch so tool emitters use one model-facing formatter.
- Collapsed apply_patch/shell serialization tests around the remaining
plain-text output expectations and removed duplicate one-variant
parameterized cases.
- Kept the `ApplyPatchModelOutput::ShellCommandViaHeredoc` compatibility
input shape, but no longer treats it as a separate output-format mode.
## Validation
- `cargo test -p codex-core client_common`
- `cargo test -p codex-core shell_serialization`
- `cargo test -p codex-core apply_patch_cli`
- `just fix -p codex-core`
## Documentation
No external Codex documentation update is needed.
## Why
Thread goal persistence is being prepared for a dedicated storage
boundary. Before that split, goal-specific reads, writes, accounting,
and cleanup were exposed directly on `StateRuntime`, so core and
app-server callsites stayed coupled to the full runtime instead of a
goal-specific store.
This PR introduces that boundary without changing the goal wire API or
current persistence behavior. Callers now go through
`StateRuntime::thread_goals()` and the new `GoalStore`, while
`GoalStore` still uses the existing state DB pool underneath.
## What changed
- Added `GoalStore` in `state/src/runtime/goals.rs` and exposed it from
`StateRuntime` via `thread_goals()`.
- Moved thread-goal reads, writes, status updates, pause, delete, and
usage accounting onto `GoalStore`.
- Updated core session goal handling, app-server goal RPCs, resume
snapshots, and goal tests to use the store boundary.
- Kept thread deletion responsible for cascading goal cleanup by
deleting the goal through the store only after a thread row is removed.
## Testing
- Existing goal persistence, resume, and accounting tests were updated
to exercise the new `GoalStore` access path.
## Why
Extension lifecycle hooks sit on the host/extension boundary, but the
current trait surface only allows synchronous callbacks. That forces
extensions that need to seed, rehydrate, observe, or flush
extension-owned state during thread and turn transitions to either block
inside the callback or move async work into separate host plumbing.
This PR makes those lifecycle callbacks awaitable so extension
implementations can perform async work directly at the lifecycle point
where the host already has the relevant session, thread, or turn stores
available.
## What changed
- Makes `ThreadLifecycleContributor` and `TurnLifecycleContributor`
async in `codex-extension-api`.
- Awaits thread start/resume/stop and turn start/stop/abort lifecycle
callbacks from `codex-core`.
- Updates the guardian and memories extensions to implement the async
lifecycle trait surface.
- Updates the existing lifecycle tests to use async contributor
implementations.
- Adds `async-trait` to the crates that now expose or implement these
async object-safe lifecycle traits.
## Testing
- Existing `codex-core` lifecycle tests were updated to cover async
implementations for thread stop and turn abort ordering.
## Why
`SandboxPolicy` is a legacy compatibility shape, but several core tests
still used it for ordinary turn setup even when the runtime path now
carries `PermissionProfile`. With the first cleanup PR merged, this
follow-up trims more core test scaffolding so remaining `SandboxPolicy`
matches are easier to classify as production compatibility,
legacy-boundary coverage, or explicit conversion tests.
## What Changed
- Updated apply-patch handler and runtime tests to pass
`PermissionProfile` directly.
- Changed sandboxing test helpers to build permission profiles without
first creating `SandboxPolicy` values.
- Converted request-permissions integration turns to pass
`PermissionProfile` through the test helper, leaving legacy sandbox
projection at the `Op::UserTurn` boundary.
- Converted unified exec integration helpers and direct turn submissions
to use `PermissionProfile` values instead of `SandboxPolicy` setup.
- Removed now-unused `SandboxPolicy` imports from the touched core
tests.
## Test Plan
- `just fmt`
- `cargo test -p codex-core --lib tools::sandboxing::tests`
- `cargo test -p codex-core --lib tools::runtimes::apply_patch::tests`
- `cargo test -p codex-core --lib tools::handlers::apply_patch::tests`
- `cargo test -p codex-core --lib unified_exec::process_manager::tests`
- `cargo test -p codex-core --test all request_permissions::`
- `cargo test -p codex-core --test all unified_exec::`
- `just fix -p codex-core`
## Summary
- Add `features.multi_agent_v2.tool_namespace` with config/schema
validation for Responses-compatible namespace values.
- Thread the resolved namespace into `ToolsConfig` for normal turns and
review turns.
- Wrap MultiAgentV2 tool specs and registry names in the configured
namespace when namespace tools are supported, while falling back to the
plain tool names when they are not.
## Validation
- `just fmt`
- `just write-config-schema`
- `cargo test -p codex-features multi_agent_v2_feature_config --
--nocapture`
- `cargo test -p codex-core test_build_specs_multi_agent_v2 --
--nocapture`
- `cargo test -p codex-core multi_agent_v2_config -- --nocapture`
- `cargo test -p codex-core
multi_agent_v2_rejects_invalid_tool_namespace -- --nocapture`
- `cargo test -p codex-tools`
- `git diff --check`
