### Summary
Fix `thread/metadata/update` so it can still patch stored thread
metadata when the list/backfill-gated `get_state_db(...)` path is
unavailable.
What was happening:
- The app logs showed `thread/metadata/update` failing with `sqlite
state db unavailable for thread ...`.
- This was not isolated to one bad thread. Once the failure started for
a user, branch metadata updates failed 100% of the time for that user.
- Reports were staggered across users, which points at local app-server
/ local SQLite state rather than one global server-side failure.
- Turns could still start immediately after the metadata update failed,
which suggests the thread itself was valid and the failure was in the
metadata endpoint DB-handle path.
The fix:
- Keep using the loaded thread state DB and the normal
`get_state_db(...)` fallback first.
- If that still returns `None`, open `StateRuntime::init(...)` directly
for this targeted metadata update path.
- Log the direct state runtime init error if that final fallback also
fails, so future reports have the real DB-open cause instead of only the
generic unavailable error.
- Add a regression test where the DB exists but backfill is not
complete, and verify `thread/metadata/update` can still repair the
stored rollout thread and patch `gitInfo`.
Relevant context / suspect PRs:
- #16434 changed state DB startup to run auto-vacuum / incremental
vacuum. This is the most suspicious timing match for per-user, staggered
local SQLite availability failures.
- #16433 dropped the old log table from the state DB, also near the
timing window.
- #13280 introduced this endpoint and made it rely on SQLite for git
metadata without resuming the thread.
- #14859 and #14888 added/consumed persisted model + reasoning effort
metadata. I checked these because of the new thread metadata fields, but
this failure happens before the endpoint reaches thread-row update/load
logic, so they seem less likely as the direct cause.
### Testing
- `cargo fmt -- --config imports_granularity=Item` completed; local
stable rustfmt emitted warnings that `imports_granularity` is unstable
- `cargo test -p codex-app-server thread_metadata_update`
- `git diff --check`
## Why
`codex-core` was re-exporting APIs owned by sibling `codex-*` crates,
which made downstream crates depend on `codex-core` as a proxy module
instead of the actual owner crate.
Removing those forwards makes crate boundaries explicit and lets leaf
crates drop unnecessary `codex-core` dependencies. In this PR, this
reduces the dependency on `codex-core` to `codex-login` in the following
files:
```
codex-rs/backend-client/Cargo.toml
codex-rs/mcp-server/tests/common/Cargo.toml
```
## What
- Remove `codex-rs/core/src/lib.rs` re-exports for symbols owned by
`codex-login`, `codex-mcp`, `codex-rollout`, `codex-analytics`,
`codex-protocol`, `codex-shell-command`, `codex-sandboxing`,
`codex-tools`, and `codex-utils-path`.
- Delete the `default_client` forwarding shim in `codex-rs/core`.
- Update in-crate and downstream callsites to import directly from the
owning `codex-*` crate.
- Add direct Cargo dependencies where callsites now target the owner
crate, and remove `codex-core` from `codex-rs/backend-client`.
## Why
`argument-comment-lint` was green in CI even though the repo still had
many uncommented literal arguments. The main gap was target coverage:
the repo wrapper did not force Cargo to inspect test-only call sites, so
examples like the `latest_session_lookup_params(true, ...)` tests in
`codex-rs/tui_app_server/src/lib.rs` never entered the blocking CI path.
This change cleans up the existing backlog, makes the default repo lint
path cover all Cargo targets, and starts rolling that stricter CI
enforcement out on the platform where it is currently validated.
## What changed
- mechanically fixed existing `argument-comment-lint` violations across
the `codex-rs` workspace, including tests, examples, and benches
- updated `tools/argument-comment-lint/run-prebuilt-linter.sh` and
`tools/argument-comment-lint/run.sh` so non-`--fix` runs default to
`--all-targets` unless the caller explicitly narrows the target set
- fixed both wrappers so forwarded cargo arguments after `--` are
preserved with a single separator
- documented the new default behavior in
`tools/argument-comment-lint/README.md`
- updated `rust-ci` so the macOS lint lane keeps the plain wrapper
invocation and therefore enforces `--all-targets`, while Linux and
Windows temporarily pass `-- --lib --bins`
That temporary CI split keeps the stricter all-targets check where it is
already cleaned up, while leaving room to finish the remaining Linux-
and Windows-specific target-gated cleanup before enabling
`--all-targets` on those runners. The Linux and Windows failures on the
intermediate revision were caused by the wrapper forwarding bug, not by
additional lint findings in those lanes.
## Validation
- `bash -n tools/argument-comment-lint/run.sh`
- `bash -n tools/argument-comment-lint/run-prebuilt-linter.sh`
- shell-level wrapper forwarding check for `-- --lib --bins`
- shell-level wrapper forwarding check for `-- --tests`
- `just argument-comment-lint`
- `cargo test` in `tools/argument-comment-lint`
- `cargo test -p codex-terminal-detection`
## Follow-up
- Clean up remaining Linux-only target-gated callsites, then switch the
Linux lint lane back to the plain wrapper invocation.
- Clean up remaining Windows-only target-gated callsites, then switch
the Windows lint lane back to the plain wrapper invocation.
- create `codex-git-utils` and move the shared git helpers into it with
file moves preserved for diff readability
- move the `GitInfo` helpers out of `core` so stacked rollout work can
depend on the shared crate without carrying its own git info module
---------
Co-authored-by: Ahmed Ibrahim <219906144+aibrahim-oai@users.noreply.github.com>
Co-authored-by: Codex <noreply@openai.com>
## Summary
- add the v2 `thread/metadata/update` API, including
protocol/schema/TypeScript exports and app-server docs
- patch stored thread `gitInfo` in sqlite without resuming the thread,
with validation plus support for explicit `null` clears
- repair missing sqlite thread rows from rollout data before patching,
and make those repairs safe by inserting only when absent and updating
only git columns so newer metadata is not clobbered
- keep sqlite authoritative for mutable thread git metadata by
preserving existing sqlite git fields during reconcile/backfill and only
using rollout `SessionMeta` git fields to fill gaps
- add regression coverage for the endpoint, repair paths, concurrent
sqlite writes, clearing git fields, and rollout/backfill reconciliation
- fix the login server shutdown race so cancelling before the waiter
starts still terminates `block_until_done()` correctly
## Testing
- `cargo test -p codex-state
apply_rollout_items_preserves_existing_git_branch_and_fills_missing_git_fields`
- `cargo test -p codex-state
update_thread_git_info_preserves_newer_non_git_metadata`
- `cargo test -p codex-core
backfill_sessions_preserves_existing_git_branch_and_fills_missing_git_fields`
- `cargo test -p codex-app-server thread_metadata_update`
- `cargo test`
- currently fails in existing `codex-core` grep-files tests with
`unsupported call: grep_files`:
- `suite::grep_files::grep_files_tool_collects_matches`
- `suite::grep_files::grep_files_tool_reports_empty_results`
