## Why
This PR builds on [#22610](https://github.com/openai/codex/pull/22610)
and is the app-server side of the migration from mutable per-turn
`SandboxPolicy` replacement toward selecting immutable permission
profiles by id plus mutable runtime workspace roots.
Once permission profiles can carry their own immutable
`workspace_roots`, app-server no longer needs to mutate the selected
`PermissionProfile` just to represent thread-specific filesystem
context. The mutable part now lives on the thread as explicit
`runtimeWorkspaceRoots`, while `:workspace_roots` remains symbolic until
the sandbox is realized for a turn.
## What Changed
- Replaced the v2 permission-selection wrapper surface with plain
profile ids for `thread/start`, `thread/resume`, `thread/fork`, and
`turn/start`.
- Removed the API surface for profile modifications
(`PermissionProfileSelectionParams`,
`PermissionProfileModificationParams`,
`ActivePermissionProfileModification`).
- Added experimental `runtimeWorkspaceRoots` fields to the thread
lifecycle and turn-start APIs.
- Threaded runtime workspace roots through core session/thread
snapshots, turn overrides, app-server request handling, and command
execution permission resolution.
- Kept session permission state symbolic so later runtime root updates
and cwd-only implicit-root retargeting rebind `:workspace_roots`
correctly.
- Updated the embedded clients just enough to send and restore the new
thread state.
- Refreshed the generated schema/TypeScript artifacts and the app-server
README to match the new contract.
## Verification
Targeted coverage for this layer lives in:
- `codex-rs/app-server-protocol/src/protocol/v2/tests.rs`
- `codex-rs/app-server/tests/suite/v2/thread_start.rs`
- `codex-rs/app-server/tests/suite/v2/thread_resume.rs`
- `codex-rs/app-server/tests/suite/v2/turn_start.rs`
- `codex-rs/core/src/session/tests.rs`
The key regression checks exercise that:
- `runtimeWorkspaceRoots` resolve against the effective cwd on thread
start.
- Profile-declared workspace roots are excluded from the runtime
workspace roots returned by app-server.
- A turn-level runtime workspace-root update persists onto the thread
and is returned by `thread/resume`.
- A named permission profile selected on one turn remains symbolic so a
later runtime-root-only turn update changes the actual sandbox writes.
- A cwd-only turn update retargets the implicit runtime cwd root while
preserving additional runtime roots.
- The protocol fixtures and generated client artifacts stay in sync with
the string-based permission selection contract.
---
[//]: # (BEGIN SAPLING FOOTER)
Stack created with [Sapling](https://sapling-scm.com). Best reviewed
with [ReviewStack](https://reviewstack.dev/openai/codex/pull/22611).
* #22612
* __->__ #22611
## Why
The app-server request path had grown around a large
`CodexMessageProcessor` plus separate API wrapper/helper modules. That
made the dependency graph hard to see and forced unrelated request
families to share broad processor state.
This PR makes the split mechanical and command-prefix oriented so
request families own only the dependencies they use.
## What changed
- Replaced `CodexMessageProcessor` with command-prefix request
processors under `app-server/src/request_processors/`.
- Removed the old config, device-key, external-agent-config, and fs API
wrapper files by moving their API handling into processors.
- Split apps, plugins, marketplace, catalog, account, MCP, command exec,
fs, git, feedback, thread, turn, thread goals, and Windows sandbox
handling into dedicated processors.
- Kept shared lifecycle, summary conversion, token usage replay, and
shared error mapping only where multiple processors use them; single-use
helpers were inlined into their owning processor.
- Removed the fallback processor path and moved processor tests to
`_tests` files.
## Validation
- `cargo test -p codex-app-server`
- `cargo check -p codex-app-server`
- `just fix -p codex-app-server`
