Add a `.sqlite` database to be used to store rollout metatdata (and
later logs)
This PR is phase 1:
* Add the database and the required infrastructure
* Add a backfill of the database
* Persist the newly created rollout both in files and in the DB
* When we need to get metadata or a rollout, consider the `JSONL` as the
source of truth but compare the results with the DB and show any errors
- `tui/` and `tui2/` submit `Op::UserTurn` and own full turn context
(cwd/approval/sandbox/model/etc.).
- `Op::UserInput` is documented as legacy in `codex-protocol` (doc-only;
no `#[deprecated]` to avoid `-D warnings` fallout).
- Remove obsolete `#[allow(deprecated)]` and the unused `ConversationId`
alias/re-export.
