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## Why We want the agent graph store to be passed down the stack as a real dependency, the same way we already treat the thread store. This will let us inject the agent graph store as a real dependency and support implementations other than the local SQLite-backed one. Right now most code instantiates a state DB and an agent graph store just-in-time. Ideally, we would not depend on the state DB directly but only read through the higher-level interfaces. This change makes the dependency boundaries explicit and moves state DB initialization to process bootstrap instead of hiding it inside local store implementations. ## What changed - `ThreadManager` now requires a `StateDbHandle` and an `AgentGraphStore` at construction time instead of treating them as optional internals. - The local store constructors no longer lazily initialize SQLite. Callers now initialize the state DB once per process and use that shared handle to build: - `LocalThreadStore` - `LocalAgentGraphStore` - App bootstraps (`app-server`, `mcp-server`, `prompt_debug`, and the thread-manager sample) now initialize the state DB up front and inject the resulting handle down the stack. - `app-server` now consistently uses its process-scoped state DB handle instead of reopening SQLite or trying to recover it from loaded threads. - Device-key storage now reuses the shared state DB handle instead of maintaining its own lazy opener. - The thread archive / descendant traversal paths now use the injected `AgentGraphStore` instead of reaching through local thread-store-specific state. ## Verification - `cargo check -p codex-core -p codex-thread-store -p codex-app-server -p codex-mcp-server -p codex-thread-manager-sample --tests` - `cargo test -p codex-thread-store` - `cargo test -p codex-core thread_manager_accepts_separate_agent_graph_store_and_thread_store -- --nocapture` - `cargo test -p codex-app-server thread_archive_archives_spawned_descendants -- --nocapture`