fix: reuse page uuids when parsing files

This commit also removes `with-id?` because it's too confusing.

Fixes LOG-3143

deps/graph-parser/test/logseq/graph_parser/block_test.cljs

@@ -102,7 +102,7 @@
                                          {})))
         "Default to enabled when :property-pages/enabled? is not in config")
 
-    (is (= ["tags" "foo" "bar"]
+    (is (= ["foo" "bar" "tags"]
            (:page-refs
             (extract-properties
              ;; tags is linkable and background-color is not