diff --git a/deps/db/src/logseq/db/frontend/malli_schema.cljs b/deps/db/src/logseq/db/frontend/malli_schema.cljs
index 808d1cf13e..4149f7ab51 100644
--- a/deps/db/src/logseq/db/frontend/malli_schema.cljs
+++ b/deps/db/src/logseq/db/frontend/malli_schema.cljs
@@ -282,12 +282,15 @@
 
 (def schema-version
   [:map
-   [:schema/version :int]])
+   [:db/ident :keyword]
+   [:schema/version :int]
+   [:block/tx-id {:optional true} :int]])
 
 (def db-ident
   [:map
    [:db/ident :keyword]
-   [:db/type {:optional true} :string]])
+   [:db/type {:optional true} :string]
+   [:block/tx-id {:optional true} :int]])
 
 (def macro
   [:map
diff --git a/deps/db/src/logseq/db/sqlite/create_graph.cljs b/deps/db/src/logseq/db/sqlite/create_graph.cljs
index 2c77771913..0f3c1b98f7 100644
--- a/deps/db/src/logseq/db/sqlite/create_graph.cljs
+++ b/deps/db/src/logseq/db/sqlite/create_graph.cljs
@@ -1,13 +1,16 @@
 (ns logseq.db.sqlite.create-graph
   "Helper fns for creating a DB graph"
   (:require [logseq.db.sqlite.util :as sqlite-util]
+            [logseq.db.frontend.schema :as db-schema]
             [logseq.db.frontend.property :as db-property]
             [logseq.db.frontend.property.util :as db-property-util]
             [datascript.core :as d]))
 
 (defn build-db-initial-data
   [config-content]
-  (let [initial-files [{:block/uuid (d/squuid)
+  (let [initial-data [{:db/ident :db/type :db/type "db"}
+                      {:db/ident :schema/version :schema/version db-schema/version}]
+        initial-files [{:block/uuid (d/squuid)
                         :file/path (str "logseq/" "config.edn")
                         :file/content config-content
                         :file/last-modified-at (js/Date.)}
@@ -33,4 +36,4 @@
                                      :block/name (sqlite-util/sanitize-page-name k-name)
                                      :block/uuid (d/squuid)})])))
                             db-property/built-in-properties)]
-    (concat initial-files default-properties)))
\ No newline at end of file
+    (concat initial-data initial-files default-properties)))
\ No newline at end of file
diff --git a/scripts/src/logseq/tasks/db_graph/create_graph.cljs b/scripts/src/logseq/tasks/db_graph/create_graph.cljs
index f70606f7c2..5db641bd7d 100644
--- a/scripts/src/logseq/tasks/db_graph/create_graph.cljs
+++ b/scripts/src/logseq/tasks/db_graph/create_graph.cljs
@@ -24,8 +24,6 @@
 (defn- setup-init-data
   "Setup initial data same as frontend.handler.repo/create-db"
   [conn]
-  ;; App doesn't persist :db/type but it does load it each time
-  (d/transact! conn [{:db/id -1 :db/ident :db/type :db/type "db"}])
   (let [config-content (or (some-> (find-on-classpath "templates/config.edn") fs/readFileSync str)
                            (do (println "Setting graph's config to empty since no templates/config.edn was found.")
                                "{}"))]
diff --git a/src/main/frontend/handler/repo.cljs b/src/main/frontend/handler/repo.cljs
index 3b12a140cf..fe2c390871 100644
--- a/src/main/frontend/handler/repo.cljs
+++ b/src/main/frontend/handler/repo.cljs
@@ -537,8 +537,6 @@
            _ (start-repo-db-if-not-exists! full-graph-name)
            _ (state/add-repo! {:url full-graph-name})
            _ (route-handler/redirect-to-home!)
-           _ (db/transact! full-graph-name [(react/kv :db/type "db")
-                                            (react/kv :schema/version db-schema/version {:id -2})])
            initial-data (sqlite-create-graph/build-db-initial-data config/config-default-content)
            _ (db/transact! full-graph-name initial-data)
            _ (repo-config-handler/set-repo-config-state! full-graph-name config/config-default-content)