From f419fbea8b36900d2e2bed448ed8b39eb6be4e62 Mon Sep 17 00:00:00 2001
From: Tienson Qin <tiensonqin@gmail.com>
Date: Thu, 25 Dec 2025 18:28:34 +0800
Subject: [PATCH] cleanup

---
 deps/db/src/logseq/db/common/view.cljs        | 20 ++---
 libs/src/LSPlugin.ts                          |  2 -
 src/main/frontend/components/header.cljs      | 28 +++----
 src/main/frontend/db/async.cljs               | 17 ----
 src/main/frontend/db/conn.cljs                |  8 +-
 src/main/frontend/db/utils.cljs               |  4 +-
 src/main/frontend/handler/events.cljs         | 30 ++-----
 src/main/frontend/handler/page.cljs           | 27 +-----
 src/main/frontend/handler/user.cljs           |  2 +-
 .../frontend/modules/shortcut/config.cljs     | 74 +----------------
 src/main/frontend/worker/db/migrate.cljs      | 83 ++++++++-----------
 src/main/frontend/worker/db_listener.cljs     | 23 +++--
 src/main/frontend/worker/db_worker.cljs       |  2 +-
 src/main/frontend/worker/rtc/client_op.cljs   |  7 +-
 src/main/frontend/worker/rtc/core.cljs        |  4 +-
 src/main/frontend/worker/search.cljs          | 16 ++--
 src/main/logseq/api/app.cljs                  |  7 +-
 src/resources/dicts/en.edn                    |  4 -
 18 files changed, 90 insertions(+), 268 deletions(-)

diff --git a/deps/db/src/logseq/db/common/view.cljs b/deps/db/src/logseq/db/common/view.cljs
index d33df0ae8c..f63b115f14 100644
--- a/deps/db/src/logseq/db/common/view.cljs
+++ b/deps/db/src/logseq/db/common/view.cljs
@@ -290,16 +290,12 @@
    (map :e)
    set))
 
-(defn- get-entities-for-all-pages [db sorting property-ident {:keys [db-based?]}]
+(defn- get-entities-for-all-pages [db sorting property-ident]
   (let [refs-count? (and (coll? sorting) (some (fn [m] (= (:id m) :block.temp/refs-count)) sorting))
-        exclude-ids (when db-based? (get-exclude-page-ids db))]
+        exclude-ids (get-exclude-page-ids db)]
     (keep (fn [d]
             (let [e (entity-plus/unsafe->Entity db (:e d))]
-              (when-not (if db-based?
-                          (exclude-ids (:db/id e))
-                          (or (ldb/hidden-or-internal-tag? e)
-                              (entity-util/property? e)
-                              (entity-util/built-in? e)))
+              (when-not (exclude-ids (:db/id e))
                 (cond-> e
                   refs-count?
                   (assoc :block.temp/refs-count (common-initial-data/get-block-refs-count db (:e d)))))))
@@ -311,11 +307,10 @@
         view-for-id (or (:db/id view-for) view-for-id*)
         non-hidden-e (fn [id] (let [e (d/entity db id)]
                                 (when-not (entity-util/hidden? e)
-                                  e)))
-        db-based? (entity-plus/db-based-graph? db)]
+                                  e)))]
     (case feat-type
       :all-pages
-      (get-entities-for-all-pages db sorting property-ident {:db-based? db-based?})
+      (get-entities-for-all-pages db sorting property-ident)
 
       :class-objects
       (db-class/get-class-objects db view-for-id)
@@ -443,10 +438,7 @@
     :else
     (let [view (d/entity db view-id)
           group-by-property (:logseq.property.view/group-by-property view)
-          db-based? (entity-plus/db-based-graph? db)
-          list-view? (or (= :logseq.property.view/type.list (:db/ident (:logseq.property.view/type view)))
-                         (and (not db-based?)
-                              (contains? #{:linked-references :unlinked-references} view-feature-type)))
+          list-view? (= :logseq.property.view/type.list (:db/ident (:logseq.property.view/type view)))
           group-by-property-ident (or (:db/ident group-by-property) group-by-property-ident)
           group-by-closed-values? (some? (:property/closed-values group-by-property))
           ref-property? (= (:db/valueType group-by-property) :db.type/ref)
diff --git a/libs/src/LSPlugin.ts b/libs/src/LSPlugin.ts
index b349933b2f..504d881c51 100644
--- a/libs/src/LSPlugin.ts
+++ b/libs/src/LSPlugin.ts
@@ -283,8 +283,6 @@ export type ExternalCommandType =
   | 'logseq.editor/up'
   | 'logseq.editor/expand-block-children'
   | 'logseq.editor/collapse-block-children'
-  | 'logseq.editor/open-file-in-default-app'
-  | 'logseq.editor/open-file-in-directory'
   | 'logseq.editor/select-all-blocks'
   | 'logseq.editor/toggle-open-blocks'
   | 'logseq.editor/zoom-in'
diff --git a/src/main/frontend/components/header.cljs b/src/main/frontend/components/header.cljs
index 78efbe95f8..64ec1fbe9b 100644
--- a/src/main/frontend/components/header.cljs
+++ b/src/main/frontend/components/header.cljs
@@ -124,17 +124,16 @@
         page-menu (if (and working-page? (ldb/page? page))
                     (page-menu/page-menu page)
                     (when-not config/publishing?
-                      (when (config/db-based-graph?)
-                        (let [block-id-str (str (:block/uuid page))
-                              favorited? (page-handler/favorited? block-id-str)]
-                          [{:title   (if favorited?
-                                       (t :page/unfavorite)
-                                       (t :page/add-to-favorites))
-                            :options {:on-click
-                                      (fn []
-                                        (if favorited?
-                                          (page-handler/<unfavorite-page! block-id-str)
-                                          (page-handler/<favorite-page! block-id-str)))}}]))))
+                      (let [block-id-str (str (:block/uuid page))
+                            favorited? (page-handler/favorited? block-id-str)]
+                        [{:title   (if favorited?
+                                     (t :page/unfavorite)
+                                     (t :page/add-to-favorites))
+                          :options {:on-click
+                                    (fn []
+                                      (if favorited?
+                                        (page-handler/<unfavorite-page! block-id-str)
+                                        (page-handler/<favorite-page! block-id-str)))}}])))
         page-menu-and-hr (concat page-menu [{:hr true}])
         login? (and (state/sub :auth/id-token) (user-handler/logged-in?))
         items (fn []
@@ -375,8 +374,7 @@
                                                  (state/set-left-sidebar-open!
                                                   (not (:ui/left-sidebar-open? @state/state))))})
         custom-home-page? (and (state/custom-home-page?)
-                               (= (state/sub-default-home-page) (state/get-current-page)))
-        db-based? (config/db-based-graph? current-repo)]
+                               (= (state/sub-default-home-page) (state/get-current-page)))]
     [:div.cp__header.drag-region#head
      {:class           (util/classnames [{:electron-mac   electron-mac?
                                           :native-ios     (mobile-util/native-ios?)
@@ -419,7 +417,6 @@
        (when (and current-repo
                   (ldb/get-graph-rtc-uuid (db/get-db))
                   (user-handler/logged-in?)
-                  db-based?
                   (user-handler/rtc-group?))
          [:<>
           (recent-slider)
@@ -432,8 +429,7 @@
        (when (user-handler/logged-in?)
          (rtc-indicator/uploading-detail))
 
-       (when db-based?
-         (semantic-search-progressing current-repo))
+       (semantic-search-progressing current-repo)
 
        (when (and (not= (state/get-current-route) :home)
                   (not custom-home-page?))
diff --git a/src/main/frontend/db/async.cljs b/src/main/frontend/db/async.cljs
index 7ea593acb5..8c92b66367 100644
--- a/src/main/frontend/db/async.cljs
+++ b/src/main/frontend/db/async.cljs
@@ -236,23 +236,6 @@
           [?b :block/tags ?class-id]]
         class-ids)))
 
-(defn <get-whiteboards
-  [graph]
-  (p/let [result (if (config/db-based-graph? graph)
-                   (<q graph {:transact-db? false}
-                       '[:find [(pull ?page [:db/id :block/uuid :block/name :block/title :block/created-at :block/updated-at]) ...]
-                         :where
-                         [?page :block/tags :logseq.class/Whiteboard]
-                         [?page :block/name]])
-                   (<q graph {:transact-db? false}
-                       '[:find [(pull ?page [:db/id :block/uuid :block/name :block/title :block/created-at :block/updated-at]) ...]
-                         :where
-                         [?page :block/type "whiteboard"]
-                         [?page :block/name]]))]
-    (->> result
-         (sort-by :block/updated-at)
-         reverse)))
-
 (defn <get-views
   [graph class-id view-feature-type]
   (<q graph {:transact-db? true}
diff --git a/src/main/frontend/db/conn.cljs b/src/main/frontend/db/conn.cljs
index 56625a29b7..78f77f6e8e 100644
--- a/src/main/frontend/db/conn.cljs
+++ b/src/main/frontend/db/conn.cljs
@@ -55,9 +55,7 @@
 
                      :else
                      repo-name)]
-    (if (config/db-based-graph? repo-name')
-      (string/replace-first repo-name' config/db-version-prefix "")
-      repo-name')))
+    (string/replace-first repo-name' config/db-version-prefix "")))
 
 (defn remove-conn!
   [repo]
@@ -84,9 +82,7 @@
    (start! repo {}))
   ([repo {:keys [listen-handler]}]
    (let [db-name (db-conn-state/get-repo-path repo)
-         db-conn (if (config/db-based-graph? repo)
-                   (d/create-conn db-schema/schema)
-                   (gp-db/start-conn))]
+         db-conn (d/create-conn db-schema/schema)]
      (destroy-all!)
      (swap! conns assoc db-name db-conn)
      (when listen-handler
diff --git a/src/main/frontend/db/utils.cljs b/src/main/frontend/db/utils.cljs
index 65b760795a..f990122c7f 100644
--- a/src/main/frontend/db/utils.cljs
+++ b/src/main/frontend/db/utils.cljs
@@ -47,9 +47,7 @@
   "Replace `[[internal-id]]` with `[[page name]]`"
   [item eid]
   (if-let [db (conn/get-db)]
-    (if (entity-plus/db-based-graph? db)
-      (db-content/update-block-content db item eid)
-      item)
+    (db-content/update-block-content db item eid)
     item))
 
 (defn pull
diff --git a/src/main/frontend/handler/events.cljs b/src/main/frontend/handler/events.cljs
index 0d69670e7e..21cf8f1d61 100644
--- a/src/main/frontend/handler/events.cljs
+++ b/src/main/frontend/handler/events.cljs
@@ -16,7 +16,6 @@
             [frontend.db.model :as db-model]
             [frontend.db.react :as react]
             [frontend.extensions.fsrs :as fsrs]
-            [frontend.fs :as fs]
             [frontend.handler.assets :as assets-handler]
             [frontend.handler.code :as code-handler]
             [frontend.handler.common.page :as page-common-handler]
@@ -57,9 +56,7 @@
 (defmethod handle :graph/added [[_ repo {:keys [empty-graph?]}]]
   (search-handler/rebuild-indices!)
   (plugin-handler/hook-plugin-app :graph-after-indexed {:repo repo :empty-graph? empty-graph?})
-  (route-handler/redirect-to-home!)
-  (when-let [dir-name (and (not (config/db-based-graph? repo)) (config/get-repo-dir repo))]
-    (fs/watch-dir! dir-name)))
+  (route-handler/redirect-to-home!))
 
 (defmethod handle :init/commands [_]
   (page-handler/init-commands!))
@@ -67,16 +64,13 @@
 (defn- graph-switch
   [graph]
   (react/clear-query-state!)
-  (let [db-based? (config/db-based-graph? graph)]
-    (state/set-current-repo! graph)
-    (page-handler/init-commands!)
-         ;; load config
-    (repo-config-handler/restore-repo-config! graph)
-    (when-not (= :draw (state/get-current-route))
-      (route-handler/redirect-to-home!))
-    (when-let [dir-name (and (not db-based?) (config/get-repo-dir graph))]
-      (fs/watch-dir! dir-name))
-    (graph-handler/settle-metadata-to-local! {:last-seen-at (js/Date.now)})))
+  (state/set-current-repo! graph)
+  (page-handler/init-commands!)
+  ;; load config
+  (repo-config-handler/restore-repo-config! graph)
+  (when-not (= :draw (state/get-current-route))
+    (route-handler/redirect-to-home!))
+  (graph-handler/settle-metadata-to-local! {:last-seen-at (js/Date.now)}))
 
 ;; Parameters for the `persist-db` function, to show the notification messages
 (defn- graph-switch-on-persisted
@@ -145,12 +139,6 @@
 ;; FIXME: config may not be loaded when the graph is ready.
 (defmethod handle :graph/ready
   [[_ repo]]
-  (when (config/local-file-based-graph? repo)
-    (p/let [dir               (config/get-repo-dir repo)
-            dir-exists?       (fs/dir-exists? dir)]
-      (when (and (not dir-exists?)
-                 (not util/nfs?))
-        (state/pub-event! [:graph/dir-gone dir]))))
   ;; FIXME: an ugly implementation for redirecting to page on new window is restored
   (repo-handler/graph-ready! repo))
 
@@ -164,7 +152,7 @@
                  {:schema-version (str db-schema/version)
                   :db-schema-version (when-let [db (db/get-db)]
                                        (str (:kv/value (db/entity db :logseq.kv/schema-version))))
-                  :db-based (config/db-based-graph? (state/get-current-repo))}
+                  :db-based true}
                  payload)]
     (Sentry/captureException error
                              (bean/->js {:tags payload
diff --git a/src/main/frontend/handler/page.cljs b/src/main/frontend/handler/page.cljs
index 9bc6437b65..5ee93dac19 100644
--- a/src/main/frontend/handler/page.cljs
+++ b/src/main/frontend/handler/page.cljs
@@ -352,34 +352,9 @@
      (:db/id page)
      :page)))
 
-(defn open-file-in-default-app []
-  (if-let [file-rpath (and (util/electron?) (page-util/get-page-file-rpath))]
-    (let [repo-dir (config/get-repo-dir (state/get-current-repo))
-          file-fpath (path/path-join repo-dir file-rpath)]
-      (js/window.apis.openPath file-fpath))
-    (notification/show! "No file found" :warning)))
-
-(defn copy-current-file
-  "FIXME: clarify usage, copy file or copy file path"
-  []
-  (if-let [file-rpath (and (util/electron?) (page-util/get-page-file-rpath))]
-    (let [repo-dir (config/get-repo-dir (state/get-current-repo))
-          file-fpath (path/path-join repo-dir file-rpath)]
-      (util/copy-to-clipboard! file-fpath))
-    (notification/show! "No file found" :warning)))
-
-(defn open-file-in-directory []
-  (if-let [file-rpath (and (util/electron?) (page-util/get-page-file-rpath))]
-    (let [repo-dir (config/get-repo-dir (state/get-current-repo))
-          file-fpath (path/path-join repo-dir file-rpath)]
-      (ipc/ipc "openFileInFolder" file-fpath))
-    (notification/show! "No file found" :warning)))
-
 (defn copy-page-url
   ([]
-   (let [id (if (config/db-based-graph? (state/get-current-repo))
-              (page-util/get-current-page-uuid)
-              (page-util/get-current-page-name))]
+   (let [id (page-util/get-current-page-uuid)]
      (copy-page-url id)))
   ([page-uuid]
    (if page-uuid
diff --git a/src/main/frontend/handler/user.cljs b/src/main/frontend/handler/user.cljs
index 1637844982..da0f6ce636 100644
--- a/src/main/frontend/handler/user.cljs
+++ b/src/main/frontend/handler/user.cljs
@@ -391,7 +391,7 @@
          (:resp resp))))))
 
 (defn <request [api-name & args]
-  (go (apply <request* api-name args)))
+  (apply <request* api-name args))
 
 (defn storage-exceed-limit?
   [exp]
diff --git a/src/main/frontend/modules/shortcut/config.cljs b/src/main/frontend/modules/shortcut/config.cljs
index b5f5156bfc..757353fec2 100644
--- a/src/main/frontend/modules/shortcut/config.cljs
+++ b/src/main/frontend/modules/shortcut/config.cljs
@@ -1,7 +1,6 @@
 (ns frontend.modules.shortcut.config
   (:require [clojure.data :as data]
             [clojure.string :as string]
-            [electron.ipc :as ipc]
             [frontend.commands :as commands]
             [frontend.components.commit :as commit]
             [frontend.config :as config]
@@ -14,7 +13,6 @@
             [frontend.handler.history :as history]
             [frontend.handler.journal :as journal-handler]
             [frontend.handler.jump :as jump-handler]
-            [frontend.handler.notification :as notification]
             [frontend.handler.page :as page-handler]
             [frontend.handler.paste :as paste-handler]
             [frontend.handler.plugin :as plugin-handler]
@@ -27,8 +25,7 @@
             [frontend.modules.shortcut.before :as m]
             [frontend.state :as state]
             [frontend.util :refer [mac?] :as util]
-            [medley.core :as medley]
-            [promesa.core :as p]))
+            [medley.core :as medley]))
 
 (defn- search
   [mode]
@@ -50,8 +47,6 @@
 ;;  * :fn - Fn or a qualified keyword that represents a fn
 ;;  * :inactive - Optional boolean to disable a shortcut for certain conditions
 ;;    e.g. a given platform or feature condition
-;;  * :file-graph? - Optional boolean to identify a command to only be run in file graphs
-;;    and warned gracefully in db graphs
 (def ^:large-vars/data-var all-built-in-keyboard-shortcuts
   {:pdf/previous-page                       {:binding "alt+p"
                                              :fn      pdf-utils/prev-page}
@@ -273,42 +268,35 @@
                                              :fn      #(state/pub-event! [:editor/toggle-own-number-list (state/get-selection-block-ids)])}
 
    :editor/add-property                     {:binding (if mac? "mod+p" "ctrl+alt+p")
-                                             :db-graph? true
                                              :fn      (fn [e]
                                                         (when e (util/stop e))
                                                         (state/pub-event! [:editor/new-property {}]))}
    :editor/set-tags                         {:binding "p t"
-                                             :db-graph? true
                                              :selection? true
                                              :fn      (fn []
                                                         (state/pub-event! [:editor/new-property {:property-key "Tags"}]))}
 
    :editor/add-property-deadline            {:binding "p d"
-                                             :db-graph? true
                                              :selection? true
                                              :fn      (fn []
                                                         (state/pub-event! [:editor/new-property {:property-key "Deadline"}]))}
 
    :editor/add-property-status              {:binding "p s"
-                                             :db-graph? true
                                              :selection? true
                                              :fn      (fn []
                                                         (state/pub-event! [:editor/new-property {:property-key "Status"}]))}
 
    :editor/add-property-priority            {:binding "p p"
-                                             :db-graph? true
                                              :selection? true
                                              :fn      (fn []
                                                         (state/pub-event! [:editor/new-property {:property-key "Priority"}]))}
 
    :editor/add-property-icon                {:binding "p i"
-                                             :db-graph? true
                                              :selection? true
                                              :fn      (fn []
                                                         (state/pub-event! [:editor/new-property {:property-key "Icon"}]))}
 
    :editor/toggle-display-hidden-properties {:binding "p a"
-                                             :db-graph? true
                                              :fn      ui-handler/toggle-show-empty-hidden-properties!}
 
    :ui/toggle-brackets                      {:binding "t b"
@@ -390,12 +378,6 @@
                                              :inactive (not (util/electron?))
                                              :binding "mod+s"}
 
-   :graph/re-index                          {:fn      (fn []
-                                                        (p/let [multiple-windows? (ipc/ipc "graphHasMultipleWindows" (state/get-current-repo))]
-                                                          (state/pub-event! [:graph/ask-for-re-index (atom multiple-windows?) nil])))
-                                             :file-graph? true
-                                             :binding []}
-
    :command/run                             {:binding  "mod+shift+1"
                                              :inactive (not (util/electron?))
                                              :fn       #(do
@@ -457,25 +439,10 @@
                                              :fn      page-handler/toggle-favorite!}
 
    :editor/quick-add                        {:binding (if mac? "mod+e" "mod+alt+e")
-                                             :db-graph? true
                                              :inactive config/publishing?
                                              :fn      editor-handler/quick-add}
    :editor/jump                             {:binding "mod+j"
                                              :fn      jump-handler/jump-to}
-   :editor/open-file-in-default-app         {:binding  "mod+d mod+a"
-                                             :inactive (not (util/electron?))
-                                             :file-graph? true
-                                             :fn       page-handler/open-file-in-default-app}
-
-   :editor/open-file-in-directory           {:binding  "mod+d mod+i"
-                                             :inactive (not (util/electron?))
-                                             :file-graph? true
-                                             :fn       page-handler/open-file-in-directory}
-
-   :editor/copy-current-file                {:binding  false
-                                             :inactive (not (util/electron?))
-                                             :file-graph? true
-                                             :fn       page-handler/copy-current-file}
 
    :editor/copy-page-url                    {:binding  []
                                              :inactive (not (util/electron?))
@@ -541,31 +508,24 @@
                        :fn :frontend.handler.common.developer/show-page-ast}
 
    :misc/export-block-data {:binding []
-                            :db-graph? true
                             :fn :frontend.handler.db-based.export/export-block-data}
 
    :misc/export-page-data {:binding []
-                           :db-graph? true
                            :fn :frontend.handler.db-based.export/export-page-data}
 
    :misc/export-graph-ontology-data {:binding []
-                                     :db-graph? true
                                      :fn :frontend.handler.db-based.export/export-graph-ontology-data}
 
    :misc/import-edn-data {:binding []
-                          :db-graph? true
                           :fn :frontend.handler.db-based.import/import-edn-data-dialog}
 
    :dev/validate-db   {:binding []
-                       :db-graph? true
                        :inactive (not (state/developer-mode?))
                        :fn :frontend.handler.common.developer/validate-db}
    :dev/rtc-stop {:binding []
-                  :db-graph? true
                   :inactive (not (state/developer-mode?))
                   :fn :frontend.handler.common.developer/rtc-stop}
    :dev/rtc-start {:binding []
-                   :db-graph? true
                    :inactive (not (state/developer-mode?))
                    :fn :frontend.handler.common.developer/rtc-start}})
 
@@ -591,24 +551,6 @@
       (resolved-fn)
       (throw (ex-info (str "Unable to resolve " keyword-fn " to a fn") {})))))
 
-(defn- wrap-fn-with-db-graph-only-warning
-  "Wraps DB graph only commands so they are only run in DB graphs and warned
-   when in file graphs"
-  [f]
-  (fn []
-    (if (config/db-based-graph? (state/get-current-repo))
-      (f)
-      (notification/show! "This command is only for DB graphs." :warning true nil 3000))))
-
-(defn- wrap-fn-with-file-graph-only-warning
-  "Wraps file graph only commands so they are only run in file graphs and warned
-   when in DB graphs"
-  [f]
-  (fn []
-    (if (config/db-based-graph? (state/get-current-repo))
-      (notification/show! "This command is only for file graphs." :warning true nil 3000)
-      (f))))
-
 (defn build-category-map [ks]
   (->> (if (sequential? ks)
          ks (let [{:keys [ns includes excludes]} ks]
@@ -626,13 +568,6 @@
               [k (if (keyword? (:fn v))
                    (assoc v :fn (resolve-fn (:fn v)))
                    v)]))
-       (map (fn [[k v]]
-              [k (cond (:file-graph? v)
-                       (update v :fn wrap-fn-with-file-graph-only-warning)
-                       (:db-graph? v)
-                       (update v :fn wrap-fn-with-db-graph-only-warning)
-                       :else
-                       v)]))
        (into {})))
 
 ;; This is the only var that should be publicly expose :fn functionality
@@ -690,7 +625,6 @@
           :graph/add
           :graph/db-add
           :graph/db-save
-          :graph/re-index
           :editor/cycle-todo
           :editor/up
           :editor/down
@@ -765,9 +699,6 @@
           :ui/toggle-help
           :ui/toggle-theme
           :ui/toggle-contents
-          :editor/open-file-in-default-app
-          :editor/open-file-in-directory
-          :editor/copy-current-file
           :editor/copy-page-url
           :editor/set-tags
           :editor/add-property-deadline
@@ -935,14 +866,11 @@
      :graph/open
      :graph/remove
      :graph/add
-     :graph/re-index
      :sidebar/close-top
      :sidebar/clear
      :sidebar/open-today-page
      :search/re-index
      :editor/insert-youtube-timestamp
-     :editor/open-file-in-default-app
-     :editor/open-file-in-directory
      :editor/copy-page-url
      :window/close
      :auto-complete/prev
diff --git a/src/main/frontend/worker/db/migrate.cljs b/src/main/frontend/worker/db/migrate.cljs
index 3559e67159..7b5e8088c0 100644
--- a/src/main/frontend/worker/db/migrate.cljs
+++ b/src/main/frontend/worker/db/migrate.cljs
@@ -128,19 +128,6 @@
                                  (fix db))]
             (concat common-fix additional-fix)))})
 
-(comment
-  (defn- rename-classes
-    [classes-to-rename]
-    (fn [db]
-      (when (ldb/db-based-graph? db)
-        (mapv (fn [[old new]]
-                (merge {:db/id (:db/id (d/entity db old))
-                        :db/ident new}
-                       (when-let [new-title (get-in db-class/built-in-classes [new :title])]
-                         {:block/title new-title
-                          :block/name (common-util/page-name-sanity-lc new-title)})))
-              classes-to-rename)))))
-
 (defn- add-quick-add-page
   [_db]
   (let [page (-> (-> (sqlite-util/build-new-page common-config/quick-add-page-name)
@@ -284,7 +271,7 @@
 
 (defn- upgrade-version!
   "Return tx-data"
-  [conn db-based? version {:keys [properties classes rename-db-idents fix] :as migrate-updates}]
+  [conn version {:keys [properties classes rename-db-idents fix] :as migrate-updates}]
   (let [version (db-schema/parse-schema-version version)
         db @conn
         new-properties (->> (select-keys db-property/built-in-properties properties)
@@ -311,9 +298,7 @@
           (rename-db-ident/rename-db-idents-migration-tx-data db rename-db-idents))
         fixes (when (fn? fix)
                 (fix db))
-        tx-data (if db-based?
-                  (concat new-class-idents new-properties new-classes rename-db-idents-tx-data fixes)
-                  fixes)
+        tx-data (concat new-class-idents new-properties new-classes rename-db-idents-tx-data fixes)
         tx-data' (concat
                   [(sqlite-util/kv :logseq.kv/schema-version version)]
                   tx-data)
@@ -328,38 +313,36 @@
   "Migrate 'frontend' datascript schema and data. To add a new migration,
   add an entry to schema-version->updates and bump db-schema/version"
   [conn & {:keys [target-version] :or {target-version db-schema/version}}]
-  (when (ldb/db-based-graph? @conn)
-    (let [db @conn
-          version-in-db (db-schema/parse-schema-version (or (:kv/value (d/entity db :logseq.kv/schema-version)) 0))
-          compare-result (db-schema/compare-schema-version target-version version-in-db)]
-      (cond
-        (zero? compare-result)
-        nil
+  (let [db @conn
+        version-in-db (db-schema/parse-schema-version (or (:kv/value (d/entity db :logseq.kv/schema-version)) 0))
+        compare-result (db-schema/compare-schema-version target-version version-in-db)]
+    (cond
+      (zero? compare-result)
+      nil
 
-        (neg? compare-result) ; outdated client, db version could be synced from server
-        (worker-util/post-message :notification ["Your app is using an outdated version that is incompatible with your current graph. Please update your app before editing this graph." :error false])
+      (neg? compare-result) ; outdated client, db version could be synced from server
+      (worker-util/post-message :notification ["Your app is using an outdated version that is incompatible with your current graph. Please update your app before editing this graph." :error false])
 
-        (pos? compare-result)
-        (try
-          (let [db-based? (ldb/db-based-graph? @conn)
-                updates (keep (fn [[v updates]]
-                                (let [v* (db-schema/parse-schema-version v)]
-                                  (when (and (neg? (db-schema/compare-schema-version version-in-db v*))
-                                             (not (pos? (db-schema/compare-schema-version v* target-version))))
-                                    [v updates])))
-                              schema-version->updates)
-                result-ks [:tx-data :db-before :db-after :migrate-updates]
-                *upgrade-result-coll (atom [])]
-            (println "DB schema migrated from" version-in-db)
-            (doseq [[v m] updates]
-              (let [r (upgrade-version! conn db-based? v m)]
-                (swap! *upgrade-result-coll conj (select-keys r result-ks))))
-            (swap! *upgrade-result-coll conj
-                   (select-keys (ensure-built-in-data-exists! conn) result-ks))
-            {:from-version version-in-db
-             :to-version target-version
-             :upgrade-result-coll @*upgrade-result-coll})
-          (catch :default e
-            (prn :error (str "DB migration failed to migrate to " target-version " from " version-in-db ":"))
-            (js/console.error e)
-            (throw e)))))))
+      (pos? compare-result)
+      (try
+        (let [updates (keep (fn [[v updates]]
+                              (let [v* (db-schema/parse-schema-version v)]
+                                (when (and (neg? (db-schema/compare-schema-version version-in-db v*))
+                                           (not (pos? (db-schema/compare-schema-version v* target-version))))
+                                  [v updates])))
+                            schema-version->updates)
+              result-ks [:tx-data :db-before :db-after :migrate-updates]
+              *upgrade-result-coll (atom [])]
+          (println "DB schema migrated from" version-in-db)
+          (doseq [[v m] updates]
+            (let [r (upgrade-version! conn v m)]
+              (swap! *upgrade-result-coll conj (select-keys r result-ks))))
+          (swap! *upgrade-result-coll conj
+                 (select-keys (ensure-built-in-data-exists! conn) result-ks))
+          {:from-version version-in-db
+           :to-version target-version
+           :upgrade-result-coll @*upgrade-result-coll})
+        (catch :default e
+          (prn :error (str "DB migration failed to migrate to " target-version " from " version-in-db ":"))
+          (js/console.error e)
+          (throw e))))))
diff --git a/src/main/frontend/worker/db_listener.cljs b/src/main/frontend/worker/db_listener.cljs
index f05fcb4382..3ad4e7171e 100644
--- a/src/main/frontend/worker/db_listener.cljs
+++ b/src/main/frontend/worker/db_listener.cljs
@@ -52,20 +52,19 @@
 
 (defn- remove-old-embeddings-and-reset-new-updates!
   [conn tx-data tx-meta]
-  (when (ldb/db-based-graph? @conn)
-    (let [;; Remove old :logseq.property.embedding/hnsw-label-updated-at when importing a graph
-          remove-old-hnsw-tx-data (when (:import-db? tx-meta)
-                                    (->> (d/datoms @conn :avet :logseq.property.embedding/hnsw-label-updated-at)
-                                         (map (fn [d]
-                                                [:db/retract (:e d) :logseq.property.embedding/hnsw-label-updated-at]))))
+  (let [;; Remove old :logseq.property.embedding/hnsw-label-updated-at when importing a graph
+        remove-old-hnsw-tx-data (when (:import-db? tx-meta)
+                                  (->> (d/datoms @conn :avet :logseq.property.embedding/hnsw-label-updated-at)
+                                       (map (fn [d]
+                                              [:db/retract (:e d) :logseq.property.embedding/hnsw-label-updated-at]))))
           ;; Mark vector embedding
-          mark-embedding-tx-data (->> (keep (fn [datom] (when (and (= :block/title (:a datom)) (:added datom) (not (string/blank? (:v datom))))
-                                                          (:e datom))) tx-data)
+        mark-embedding-tx-data (->> (keep (fn [datom] (when (and (= :block/title (:a datom)) (:added datom) (not (string/blank? (:v datom))))
+                                                        (:e datom))) tx-data)
                                       ;; Mark block embedding to be computed
-                                      (map (fn [id] [:db/add id :logseq.property.embedding/hnsw-label-updated-at 0])))
-          tx-data (concat remove-old-hnsw-tx-data mark-embedding-tx-data)]
-      (when (seq tx-data)
-        (ldb/transact! conn tx-data {:skip-validate-db? true})))))
+                                    (map (fn [id] [:db/add id :logseq.property.embedding/hnsw-label-updated-at 0])))
+        tx-data (concat remove-old-hnsw-tx-data mark-embedding-tx-data)]
+    (when (seq tx-data)
+      (ldb/transact! conn tx-data {:skip-validate-db? true}))))
 
 (defn listen-db-changes!
   [repo conn & {:keys [handler-keys]}]
diff --git a/src/main/frontend/worker/db_worker.cljs b/src/main/frontend/worker/db_worker.cljs
index 335b53762a..dcbff935b5 100644
--- a/src/main/frontend/worker/db_worker.cljs
+++ b/src/main/frontend/worker/db_worker.cljs
@@ -226,7 +226,7 @@
             storage (new-sqlite-storage db)
             client-ops-storage (when-not @*publishing?
                                  (new-sqlite-storage client-ops-db))
-            db-based? (sqlite-util/db-based-graph? repo)]
+            db-based? true]
       (swap! *sqlite-conns assoc repo {:db db
                                        :search search-db
                                        :client-ops client-ops-db})
diff --git a/src/main/frontend/worker/rtc/client_op.cljs b/src/main/frontend/worker/rtc/client_op.cljs
index d56fac37a3..f4e0660dec 100644
--- a/src/main/frontend/worker/rtc/client_op.cljs
+++ b/src/main/frontend/worker/rtc/client_op.cljs
@@ -423,11 +423,10 @@
      (count (get-all-update-kv-value-ops* @conn)))))
 
 (defn rtc-db-graph?
-  "Is db-graph & RTC enabled"
+  "Is RTC enabled"
   [repo]
-  (and (sqlite-util/db-based-graph? repo)
-       (or (exists? js/process)
-           (some? (get-graph-uuid repo)))))
+  (or (exists? js/process)
+      (some? (get-graph-uuid repo))))
 
 (defn create-pending-block-ops-count-flow
   [repo]
diff --git a/src/main/frontend/worker/rtc/core.cljs b/src/main/frontend/worker/rtc/core.cljs
index e25352e4e4..3a0f9c7d8c 100644
--- a/src/main/frontend/worker/rtc/core.cljs
+++ b/src/main/frontend/worker/rtc/core.cljs
@@ -419,9 +419,7 @@
     (let [repo (worker-state/get-current-repo)
           token (worker-state/get-id-token)
           conn (worker-state/get-datascript-conn repo)]
-      (if-not (and repo
-                   (sqlite-util/db-based-graph? repo)
-                   conn token)
+      (if-not (and repo conn token)
         (log/info :skip-new-task--rtc-start
                   {:repo repo
                    :some?-conn (some? conn)
diff --git a/src/main/frontend/worker/search.cljs b/src/main/frontend/worker/search.cljs
index ecd44d2e2f..04fac057b7 100644
--- a/src/main/frontend/worker/search.cljs
+++ b/src/main/frontend/worker/search.cljs
@@ -13,7 +13,6 @@
             [logseq.common.util.namespace :as ns-util]
             [logseq.db :as ldb]
             [logseq.db.frontend.content :as db-content]
-            [logseq.db.sqlite.util :as sqlite-util]
             [logseq.graph-parser.text :as text]
             [missionary.core :as m]))
 
@@ -236,9 +235,8 @@ DROP TRIGGER IF EXISTS blocks_au;
   [db]
   (let [page-ids (->> (d/datoms db :avet :block/name)
                       (map :e))
-        object-ids (when (ldb/db-based-graph? db)
-                     (->> (d/datoms db :avet :block/tags)
-                          (map :e)))
+        object-ids (->> (d/datoms db :avet :block/tags)
+                        (map :e))
         blocks (->> (distinct (concat page-ids object-ids))
                     (map #(d/entity db %)))]
     (remove hidden-entity? blocks)))
@@ -459,7 +457,7 @@ DROP TRIGGER IF EXISTS blocks_au;
        (keep block->index)))
 
 (defn- get-blocks-from-datoms-impl
-  [repo {:keys [db-after db-before]} datoms]
+  [{:keys [db-after db-before]} datoms]
   (when (seq datoms)
     (let [blocks-to-add-set (->> (filter :added datoms)
                                  (map :e)
@@ -468,7 +466,7 @@ DROP TRIGGER IF EXISTS blocks_au;
                                     (filter #(= :block/uuid (:a %)))
                                     (map :e)
                                     (set))
-          blocks-to-add-set' (if (and (sqlite-util/db-based-graph? repo) (seq blocks-to-add-set))
+          blocks-to-add-set' (if (seq blocks-to-add-set)
                                (->> blocks-to-add-set
                                     (mapcat (fn [id] (map :db/id (:block/_refs (d/entity db-after id)))))
                                     (concat blocks-to-add-set)
@@ -481,7 +479,7 @@ DROP TRIGGER IF EXISTS blocks_au;
                               (remove hidden-entity?))})))
 
 (defn- get-affected-blocks
-  [repo tx-report]
+  [tx-report]
   (let [data (:tx-data tx-report)
         datoms (filter
                 (fn [datom]
@@ -489,11 +487,11 @@ DROP TRIGGER IF EXISTS blocks_au;
                   (contains? #{:block/uuid :block/name :block/title :block/properties} (:a datom)))
                 data)]
     (when (seq datoms)
-      (get-blocks-from-datoms-impl repo tx-report datoms))))
+      (get-blocks-from-datoms-impl tx-report datoms))))
 
 (defn sync-search-indice
   [repo tx-report]
-  (let [{:keys [blocks-to-add blocks-to-remove]} (get-affected-blocks repo tx-report)]
+  (let [{:keys [blocks-to-add blocks-to-remove]} (get-affected-blocks tx-report)]
     ;; update page title indice
     (let [fuzzy-blocks-to-add (filter page-or-object? blocks-to-add)
           fuzzy-blocks-to-remove (filter page-or-object? blocks-to-remove)]
diff --git a/src/main/logseq/api/app.cljs b/src/main/logseq/api/app.cljs
index 8e51a0a0bd..76dac7daab 100644
--- a/src/main/logseq/api/app.cljs
+++ b/src/main/logseq/api/app.cljs
@@ -84,12 +84,7 @@
 
 (def get_current_graph_favorites
   (fn []
-    (if (config/db-based-graph?)
-      (db-based-api/get-favorites)
-      (some->> (:favorites (state/get-config))
-               (remove string/blank?)
-               (filter string?)
-               (bean/->js)))))
+    (db-based-api/get-favorites)))
 
 (def get_current_graph_recent
   (fn []
diff --git a/src/resources/dicts/en.edn b/src/resources/dicts/en.edn
index 2d1512a88d..af9eb14985 100644
--- a/src/resources/dicts/en.edn
+++ b/src/resources/dicts/en.edn
@@ -613,7 +613,6 @@
   :graph/add                      "Add a graph"
   :graph/db-add                   "Add a DB graph"
   :graph/db-save                  "Save the current db to the disk (~/logseq/graphs/your-current-graph)"
-  :graph/re-index                 "Re-index current graph"
   :command/run                    "Run git command"
   :go/home                        "Go to home"
   :go/all-graphs                  "Go to all graphs"
@@ -634,9 +633,6 @@
   :ui/customize-appearance        "Customize appearance"
   ;;  :ui/open-new-window             "Open another window"
   :command/toggle-favorite "Add to/remove from favorites"
-  :editor/open-file-in-default-app "Open file in default app"
-  :editor/open-file-in-directory "Open file in parent directory"
-  :editor/copy-current-file "Copy current file"
   :editor/copy-page-url "Copy page url"
   :ui/toggle-wide-mode "Toggle wide mode"
   :ui/highlight-recent-blocks "Toggle highlight recent blocks"