diff --git a/packages/web/src/content/docs/agents.mdx b/packages/web/src/content/docs/agents.mdx
index b85bd2142f..22bed7f16a 100644
--- a/packages/web/src/content/docs/agents.mdx
+++ b/packages/web/src/content/docs/agents.mdx
@@ -157,10 +157,10 @@ Configure agents in your `opencode.json` config file:
 
 You can also define agents using markdown files. Place them in:
 
-- Global: `~/.config/opencode/agent/`
-- Per-project: `.opencode/agent/`
+- Global: `~/.config/opencode/agents/`
+- Per-project: `.opencode/agents/`
 
-```markdown title="~/.config/opencode/agent/review.md"
+```markdown title="~/.config/opencode/agents/review.md"
 ---
 description: Reviews code for quality and best practices
 mode: subagent
@@ -419,7 +419,7 @@ You can override these permissions per agent.
 
 You can also set permissions in Markdown agents.
 
-```markdown title="~/.config/opencode/agent/review.md"
+```markdown title="~/.config/opencode/agents/review.md"
 ---
 description: Code review without edits
 mode: subagent
@@ -637,7 +637,7 @@ Do you have an agent you'd like to share? [Submit a PR](https://github.com/anoma
 
 ### Documentation agent
 
-```markdown title="~/.config/opencode/agent/docs-writer.md"
+```markdown title="~/.config/opencode/agents/docs-writer.md"
 ---
 description: Writes and maintains project documentation
 mode: subagent
@@ -659,7 +659,7 @@ Focus on:
 
 ### Security auditor
 
-```markdown title="~/.config/opencode/agent/security-auditor.md"
+```markdown title="~/.config/opencode/agents/security-auditor.md"
 ---
 description: Performs security audits and identifies vulnerabilities
 mode: subagent
diff --git a/packages/web/src/content/docs/commands.mdx b/packages/web/src/content/docs/commands.mdx
index 92ca08bd2e..1d7e4f1c21 100644
--- a/packages/web/src/content/docs/commands.mdx
+++ b/packages/web/src/content/docs/commands.mdx
@@ -15,11 +15,11 @@ Custom commands are in addition to the built-in commands like `/init`, `/undo`,
 
 ## Create command files
 
-Create markdown files in the `command/` directory to define custom commands.
+Create markdown files in the `commands/` directory to define custom commands.
 
-Create `.opencode/command/test.md`:
+Create `.opencode/commands/test.md`:
 
-```md title=".opencode/command/test.md"
+```md title=".opencode/commands/test.md"
 ---
 description: Run tests with coverage
 agent: build
@@ -42,7 +42,7 @@ Use the command by typing `/` followed by the command name.
 
 ## Configure
 
-You can add custom commands through the OpenCode config or by creating markdown files in the `command/` directory.
+You can add custom commands through the OpenCode config or by creating markdown files in the `commands/` directory.
 
 ---
 
@@ -79,10 +79,10 @@ Now you can run this command in the TUI:
 
 You can also define commands using markdown files. Place them in:
 
-- Global: `~/.config/opencode/command/`
-- Per-project: `.opencode/command/`
+- Global: `~/.config/opencode/commands/`
+- Per-project: `.opencode/commands/`
 
-```markdown title="~/.config/opencode/command/test.md"
+```markdown title="~/.config/opencode/commands/test.md"
 ---
 description: Run tests with coverage
 agent: build
@@ -112,7 +112,7 @@ The prompts for the custom commands support several special placeholders and syn
 
 Pass arguments to commands using the `$ARGUMENTS` placeholder.
 
-```md title=".opencode/command/component.md"
+```md title=".opencode/commands/component.md"
 ---
 description: Create a new component
 ---
@@ -138,7 +138,7 @@ You can also access individual arguments using positional parameters:
 
 For example:
 
-```md title=".opencode/command/create-file.md"
+```md title=".opencode/commands/create-file.md"
 ---
 description: Create a new file with content
 ---
@@ -167,7 +167,7 @@ Use _!`command`_ to inject [bash command](/docs/tui#bash-commands) output into y
 
 For example, to create a custom command that analyzes test coverage:
 
-```md title=".opencode/command/analyze-coverage.md"
+```md title=".opencode/commands/analyze-coverage.md"
 ---
 description: Analyze test coverage
 ---
@@ -180,7 +180,7 @@ Based on these results, suggest improvements to increase coverage.
 
 Or to review recent changes:
 
-```md title=".opencode/command/review-changes.md"
+```md title=".opencode/commands/review-changes.md"
 ---
 description: Review recent changes
 ---
@@ -199,7 +199,7 @@ Commands run in your project's root directory and their output becomes part of t
 
 Include files in your command using `@` followed by the filename.
 
-```md title=".opencode/command/review-component.md"
+```md title=".opencode/commands/review-component.md"
 ---
 description: Review component
 ---
diff --git a/packages/web/src/content/docs/config.mdx b/packages/web/src/content/docs/config.mdx
index eeb41b943c..1474cb9155 100644
--- a/packages/web/src/content/docs/config.mdx
+++ b/packages/web/src/content/docs/config.mdx
@@ -51,6 +51,10 @@ Config sources are loaded in this order (later sources override earlier ones):
 
 This means project configs can override global defaults, and global configs can override remote organizational defaults.
 
+:::note
+The `.opencode` and `~/.config/opencode` directories use **plural names** for subdirectories: `agents/`, `commands/`, `modes/`, `plugins/`, `skills/`, `tools/`, and `themes/`. Singular names (e.g., `agent/`) are also supported for backwards compatibility.
+:::
+
 ---
 
 ### Remote
@@ -330,7 +334,7 @@ You can configure specialized agents for specific tasks through the `agent` opti
 }
 ```
 
-You can also define agents using markdown files in `~/.config/opencode/agent/` or `.opencode/agent/`. [Learn more here](/docs/agents).
+You can also define agents using markdown files in `~/.config/opencode/agents/` or `.opencode/agents/`. [Learn more here](/docs/agents).
 
 ---
 
@@ -394,7 +398,7 @@ You can configure custom commands for repetitive tasks through the `command` opt
 }
 ```
 
-You can also define commands using markdown files in `~/.config/opencode/command/` or `.opencode/command/`. [Learn more here](/docs/commands).
+You can also define commands using markdown files in `~/.config/opencode/commands/` or `.opencode/commands/`. [Learn more here](/docs/commands).
 
 ---
 
@@ -530,7 +534,7 @@ You can configure MCP servers you want to use through the `mcp` option.
 
 [Plugins](/docs/plugins) extend OpenCode with custom tools, hooks, and integrations.
 
-Place plugin files in `.opencode/plugin/` or `~/.config/opencode/plugin/`. You can also load plugins from npm through the `plugin` option.
+Place plugin files in `.opencode/plugins/` or `~/.config/opencode/plugins/`. You can also load plugins from npm through the `plugin` option.
 
 ```json title="opencode.json"
 {
diff --git a/packages/web/src/content/docs/custom-tools.mdx b/packages/web/src/content/docs/custom-tools.mdx
index 2701be6508..e089a035b4 100644
--- a/packages/web/src/content/docs/custom-tools.mdx
+++ b/packages/web/src/content/docs/custom-tools.mdx
@@ -17,8 +17,8 @@ Tools are defined as **TypeScript** or **JavaScript** files. However, the tool d
 
 They can be defined:
 
-- Locally by placing them in the `.opencode/tool/` directory of your project.
-- Or globally, by placing them in `~/.config/opencode/tool/`.
+- Locally by placing them in the `.opencode/tools/` directory of your project.
+- Or globally, by placing them in `~/.config/opencode/tools/`.
 
 ---
 
@@ -26,7 +26,7 @@ They can be defined:
 
 The easiest way to create tools is using the `tool()` helper which provides type-safety and validation.
 
-```ts title=".opencode/tool/database.ts" {1}
+```ts title=".opencode/tools/database.ts" {1}
 import { tool } from "@opencode-ai/plugin"
 
 export default tool({
@@ -49,7 +49,7 @@ The **filename** becomes the **tool name**. The above creates a `database` tool.
 
 You can also export multiple tools from a single file. Each export becomes **a separate tool** with the name **`<filename>_<exportname>`**:
 
-```ts title=".opencode/tool/math.ts"
+```ts title=".opencode/tools/math.ts"
 import { tool } from "@opencode-ai/plugin"
 
 export const add = tool({
@@ -112,7 +112,7 @@ export default {
 
 Tools receive context about the current session:
 
-```ts title=".opencode/tool/project.ts" {8}
+```ts title=".opencode/tools/project.ts" {8}
 import { tool } from "@opencode-ai/plugin"
 
 export default tool({
@@ -136,7 +136,7 @@ You can write your tools in any language you want. Here's an example that adds t
 
 First, create the tool as a Python script:
 
-```python title=".opencode/tool/add.py"
+```python title=".opencode/tools/add.py"
 import sys
 
 a = int(sys.argv[1])
@@ -146,7 +146,7 @@ print(a + b)
 
 Then create the tool definition that invokes it:
 
-```ts title=".opencode/tool/python-add.ts" {10}
+```ts title=".opencode/tools/python-add.ts" {10}
 import { tool } from "@opencode-ai/plugin"
 
 export default tool({
@@ -156,7 +156,7 @@ export default tool({
     b: tool.schema.number().describe("Second number"),
   },
   async execute(args) {
-    const result = await Bun.$`python3 .opencode/tool/add.py ${args.a} ${args.b}`.text()
+    const result = await Bun.$`python3 .opencode/tools/add.py ${args.a} ${args.b}`.text()
     return result.trim()
   },
 })
diff --git a/packages/web/src/content/docs/modes.mdx b/packages/web/src/content/docs/modes.mdx
index a31a8223b0..57c1c54a95 100644
--- a/packages/web/src/content/docs/modes.mdx
+++ b/packages/web/src/content/docs/modes.mdx
@@ -87,10 +87,10 @@ Configure modes in your `opencode.json` config file:
 
 You can also define modes using markdown files. Place them in:
 
-- Global: `~/.config/opencode/mode/`
-- Project: `.opencode/mode/`
+- Global: `~/.config/opencode/modes/`
+- Project: `.opencode/modes/`
 
-```markdown title="~/.config/opencode/mode/review.md"
+```markdown title="~/.config/opencode/modes/review.md"
 ---
 model: anthropic/claude-sonnet-4-20250514
 temperature: 0.1
@@ -268,9 +268,9 @@ You can create your own custom modes by adding them to the configuration. Here a
 
 ### Using markdown files
 
-Create mode files in `.opencode/mode/` for project-specific modes or `~/.config/opencode/mode/` for global modes:
+Create mode files in `.opencode/modes/` for project-specific modes or `~/.config/opencode/modes/` for global modes:
 
-```markdown title=".opencode/mode/debug.md"
+```markdown title=".opencode/modes/debug.md"
 ---
 temperature: 0.1
 tools:
@@ -294,7 +294,7 @@ Focus on:
 Do not make any changes to files. Only investigate and report.
 ```
 
-```markdown title="~/.config/opencode/mode/refactor.md"
+```markdown title="~/.config/opencode/modes/refactor.md"
 ---
 model: anthropic/claude-sonnet-4-20250514
 temperature: 0.2
diff --git a/packages/web/src/content/docs/permissions.mdx b/packages/web/src/content/docs/permissions.mdx
index b4f0691ced..4df3841e34 100644
--- a/packages/web/src/content/docs/permissions.mdx
+++ b/packages/web/src/content/docs/permissions.mdx
@@ -174,7 +174,7 @@ Refer to the [Granular Rules (Object Syntax)](#granular-rules-object-syntax) sec
 
 You can also configure agent permissions in Markdown:
 
-```markdown title="~/.config/opencode/agent/review.md"
+```markdown title="~/.config/opencode/agents/review.md"
 ---
 description: Code review without edits
 mode: subagent
diff --git a/packages/web/src/content/docs/plugins.mdx b/packages/web/src/content/docs/plugins.mdx
index bf26744f6c..66a1b3cad9 100644
--- a/packages/web/src/content/docs/plugins.mdx
+++ b/packages/web/src/content/docs/plugins.mdx
@@ -19,8 +19,8 @@ There are two ways to load plugins.
 
 Place JavaScript or TypeScript files in the plugin directory.
 
-- `.opencode/plugin/` - Project-level plugins
-- `~/.config/opencode/plugin/` - Global plugins
+- `.opencode/plugins/` - Project-level plugins
+- `~/.config/opencode/plugins/` - Global plugins
 
 Files in these directories are automatically loaded at startup.
 
@@ -57,8 +57,8 @@ Plugins are loaded from all sources and all hooks run in sequence. The load orde
 
 1. Global config (`~/.config/opencode/opencode.json`)
 2. Project config (`opencode.json`)
-3. Global plugin directory (`~/.config/opencode/plugin/`)
-4. Project plugin directory (`.opencode/plugin/`)
+3. Global plugin directory (`~/.config/opencode/plugins/`)
+4. Project plugin directory (`.opencode/plugins/`)
 
 Duplicate npm packages with the same name and version are loaded once. However, a local plugin and an npm plugin with similar names are both loaded separately.
 
@@ -85,7 +85,7 @@ Local plugins and custom tools can use external npm packages. Add a `package.jso
 
 OpenCode runs `bun install` at startup to install these. Your plugins and tools can then import them.
 
-```ts title=".opencode/plugin/my-plugin.ts"
+```ts title=".opencode/plugins/my-plugin.ts"
 import { escape } from "shescape"
 
 export const MyPlugin = async (ctx) => {
@@ -103,7 +103,7 @@ export const MyPlugin = async (ctx) => {
 
 ### Basic structure
 
-```js title=".opencode/plugin/example.js"
+```js title=".opencode/plugins/example.js"
 export const MyPlugin = async ({ project, client, $, directory, worktree }) => {
   console.log("Plugin initialized!")
 
@@ -215,7 +215,7 @@ Here are some examples of plugins you can use to extend opencode.
 
 Send notifications when certain events occur:
 
-```js title=".opencode/plugin/notification.js"
+```js title=".opencode/plugins/notification.js"
 export const NotificationPlugin = async ({ project, client, $, directory, worktree }) => {
   return {
     event: async ({ event }) => {
@@ -240,7 +240,7 @@ If you’re using the OpenCode desktop app, it can send system notifications aut
 
 Prevent opencode from reading `.env` files:
 
-```javascript title=".opencode/plugin/env-protection.js"
+```javascript title=".opencode/plugins/env-protection.js"
 export const EnvProtection = async ({ project, client, $, directory, worktree }) => {
   return {
     "tool.execute.before": async (input, output) => {
@@ -258,7 +258,7 @@ export const EnvProtection = async ({ project, client, $, directory, worktree })
 
 Plugins can also add custom tools to opencode:
 
-```ts title=".opencode/plugin/custom-tools.ts"
+```ts title=".opencode/plugins/custom-tools.ts"
 import { type Plugin, tool } from "@opencode-ai/plugin"
 
 export const CustomToolsPlugin: Plugin = async (ctx) => {
@@ -292,7 +292,7 @@ Your custom tools will be available to opencode alongside built-in tools.
 
 Use `client.app.log()` instead of `console.log` for structured logging:
 
-```ts title=".opencode/plugin/my-plugin.ts"
+```ts title=".opencode/plugins/my-plugin.ts"
 export const MyPlugin = async ({ client }) => {
   await client.app.log({
     service: "my-plugin",
@@ -311,7 +311,7 @@ Levels: `debug`, `info`, `warn`, `error`. See [SDK documentation](https://openco
 
 Customize the context included when a session is compacted:
 
-```ts title=".opencode/plugin/compaction.ts"
+```ts title=".opencode/plugins/compaction.ts"
 import type { Plugin } from "@opencode-ai/plugin"
 
 export const CompactionPlugin: Plugin = async (ctx) => {
@@ -335,7 +335,7 @@ The `experimental.session.compacting` hook fires before the LLM generates a cont
 
 You can also replace the compaction prompt entirely by setting `output.prompt`:
 
-```ts title=".opencode/plugin/custom-compaction.ts"
+```ts title=".opencode/plugins/custom-compaction.ts"
 import type { Plugin } from "@opencode-ai/plugin"
 
 export const CustomCompactionPlugin: Plugin = async (ctx) => {
diff --git a/packages/web/src/content/docs/skills.mdx b/packages/web/src/content/docs/skills.mdx
index 54c2c9d06e..553931eec4 100644
--- a/packages/web/src/content/docs/skills.mdx
+++ b/packages/web/src/content/docs/skills.mdx
@@ -13,8 +13,8 @@ Skills are loaded on-demand via the native `skill` tool—agents see available s
 Create one folder per skill name and put a `SKILL.md` inside it.
 OpenCode searches these locations:
 
-- Project config: `.opencode/skill/<name>/SKILL.md`
-- Global config: `~/.config/opencode/skill/<name>/SKILL.md`
+- Project config: `.opencode/skills/<name>/SKILL.md`
+- Global config: `~/.config/opencode/skills/<name>/SKILL.md`
 - Project Claude-compatible: `.claude/skills/<name>/SKILL.md`
 - Global Claude-compatible: `~/.claude/skills/<name>/SKILL.md`
 
@@ -23,9 +23,9 @@ OpenCode searches these locations:
 ## Understand discovery
 
 For project-local paths, OpenCode walks up from your current working directory until it reaches the git worktree.
-It loads any matching `skill/*/SKILL.md` in `.opencode/` and any matching `.claude/skills/*/SKILL.md` along the way.
+It loads any matching `skills/*/SKILL.md` in `.opencode/` and any matching `.claude/skills/*/SKILL.md` along the way.
 
-Global definitions are also loaded from `~/.config/opencode/skill/*/SKILL.md` and `~/.claude/skills/*/SKILL.md`.
+Global definitions are also loaded from `~/.config/opencode/skills/*/SKILL.md` and `~/.claude/skills/*/SKILL.md`.
 
 ---
 
@@ -71,7 +71,7 @@ Keep it specific enough for the agent to choose correctly.
 
 ## Use an example
 
-Create `.opencode/skill/git-release/SKILL.md` like this:
+Create `.opencode/skills/git-release/SKILL.md` like this:
 
 ```markdown
 ---