Abhinav 934a40c7d9 Use root repo hooks in linked worktrees (#21969)
# Why

Linked worktrees currently load their own project hook declarations, so
the same repo can present different hook definitions depending on which
checkout is active. https://github.com/openai/codex/pull/21762 tried to
share trust by giving matching worktree hooks a shared synthetic key,
but review pointed out that divergent worktree hook definitions would
then fight over one `trusted_hash`.

Instead of introducing a second trust model, this makes linked worktrees
use the root checkout as the single source of truth for project hook
declarations. Worktree-local project config can still diverge for
unrelated settings, but project hooks now keep one real source path and
one trust state per repo.

# What

- Teach project config loading to remember the matching root-checkout
`.codex/` folder for actual linked-worktree project layers.
- Keep ordinary project config sourced from the worktree, but replace
project hook declarations with the root checkout's matching layer before
hook discovery runs, including linked-worktree layers with `.codex/` but
no local `config.toml`.
- Make hook discovery use that authoritative hook folder for both
`hooks.json` and TOML hook source paths, so linked worktrees produce the
same hook key and trust state as the root checkout.
- Cover the linked-worktree path plus regressions for missing worktree
`config.toml` and nested non-worktree project roots.
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