Andi Liu 4c9dbc1f88 memories: exclude AGENTS and skills from stage1 input (#14268)
###### Why/Context/Summary
- Exclude injected AGENTS.md instructions and standalone skill payloads
from memory stage 1 inputs so memory generation focuses on conversation
content instead of prompt scaffolding.
- Strip only the AGENTS fragment from mixed contextual user messages
during stage-1 serialization, which preserves environment context in the
same message.
- Keep subagent notifications in the memory input, and add focused unit
coverage for the fragment classifier, rollout policy, and stage-1
serialization path.

###### Test plan
- `just fmt`
- `cargo test -p codex-core --lib contextual_user_message`
- `cargo test -p codex-core --lib rollout::policy`
- `cargo test -p codex-core --lib memories::phase1`
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